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» Upper bounds on maximum likelihood for phylogenetic trees
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JCB
2000
101views more  JCB 2000»
13 years 10 months ago
Evaluation Measures of Multiple Sequence Alignments
Multiple sequence alignments (MSAs) are frequently used in the study of families of protein sequences or DNA/RNA sequences. They are a fundamental tool for the understanding of th...
Gaston H. Gonnet, Chantal Korostensky, Steven A. B...
ALT
2010
Springer
14 years 9 days ago
Inferring Social Networks from Outbreaks
We consider the problem of inferring the most likely social network given connectivity constraints imposed by observations of outbreaks within the network. Given a set of vertices ...
Dana Angluin, James Aspnes, Lev Reyzin
BMCBI
2008
104views more  BMCBI 2008»
13 years 11 months ago
Comparison of methods for estimating the nucleotide substitution matrix
Background: The nucleotide substitution rate matrix is a key parameter of molecular evolution. Several methods for inferring this parameter have been proposed, with different math...
Maribeth Oscamou, Daniel McDonald, Von Bing Yap, G...
IWSEC
2010
Springer
13 years 9 months ago
Optimal Adversary Behavior for the Serial Model of Financial Attack Trees
Abstract. Attack tree analysis is used to estimate different parameters of general security threats based on information available for atomic subthreats. We focus on estimating the...
Margus Niitsoo
SPAA
1996
ACM
14 years 2 months ago
Constant Time per Edge is Optimal on Rooted Tree Networks
We analyze the relationship between the expected packet delay in rooted tree networks and the distribution of time needed for a packet to cross an edge using convexity-based stoch...
Michael Mitzenmacher