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» Using Multiple Alignments to Improve Gene Prediction
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NAACL
2007
15 years 5 months ago
Multiple Aspect Ranking Using the Good Grief Algorithm
We address the problem of analyzing multiple related opinions in a text. For instance, in a restaurant review such opinions may include food, ambience and service. We formulate th...
Benjamin Snyder, Regina Barzilay
BMCBI
2006
182views more  BMCBI 2006»
15 years 3 months ago
A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila
Background: Biological processes are mediated by networks of interacting genes and proteins. Efforts to map and understand these networks are resulting in the proliferation of int...
Svetlana Pacifico, Guozhen Liu, Stephen Guest, Jod...
RECOMB
2003
Springer
16 years 4 months ago
Phylogenetically and spatially conserved word pairs associated with gene expression changes in yeasts
Background: Transcriptional regulation in eukaryotes often involves multiple transcription factors binding to the same transcription control region, and to understand the regulato...
Derek Y. Chiang, Alan M. Moses, Manolis Kamvysseli...
EKAW
2004
Springer
15 years 9 months ago
A Hybrid Algorithm for Alignment of Concept Hierarchies
Hierarchical categorization is a powerful and convenient method so that it is commonly used in various areas, such as ontologies. Although each hierarchy is useful, there are probl...
Ryutaro Ichise, Masahiro Hamasaki, Hideaki Takeda
BMCBI
2005
223views more  BMCBI 2005»
15 years 3 months ago
Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling
Background: The completion of the sequencing of human, mouse and rat genomes and knowledge of cross-species gene homologies enables studies of differential gene expression in anim...
Hong Fang, Weida Tong, Roger Perkins, Leming M. Sh...