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» Using Multiple Alignments to Improve Gene Prediction
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157
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JIB
2006
220views more  JIB 2006»
15 years 3 months ago
An assessment of machine and statistical learning approaches to inferring networks of protein-protein interactions
Protein-protein interactions (PPI) play a key role in many biological systems. Over the past few years, an explosion in availability of functional biological data obtained from hi...
Fiona Browne, Haiying Wang, Huiru Zheng, Francisco...
126
Voted
BMCBI
2010
193views more  BMCBI 2010»
15 years 3 months ago
Probe set filtering increases correlation between Affymetrix GeneChip and qRT-PCR expression measurements
Background: Affymetrix GeneChip microarrays are popular platforms for expression profiling in two types of studies: detection of differential expression computed by p-values of t-...
Jakub Mieczkowski, Magdalena E. Tyburczy, Michal D...
110
Voted
EMNLP
2008
15 years 5 months ago
Two Languages are Better than One (for Syntactic Parsing)
We show that jointly parsing a bitext can substantially improve parse quality on both sides. In a maximum entropy bitext parsing model, we define a distribution over source trees,...
David Burkett, Dan Klein
152
Voted
BMCBI
2010
165views more  BMCBI 2010»
15 years 3 months ago
Filtering, FDR and power
Background: In high-dimensional data analysis such as differential gene expression analysis, people often use filtering methods like fold-change or variance filters in an attempt ...
Maarten van Iterson, Judith M. Boer, Renée ...
159
Voted
BCB
2010
156views Bioinformatics» more  BCB 2010»
14 years 10 months ago
RepFrag: a graph based method for finding repeats and transposons from fragmented genomes
Growing sequencing and assembly efforts have been met by the advances in high throughput machines. However, the presence of massive amounts of repeats and transposons complicates ...
Nirmalya Bandyopadhyay, A. Mark Settles, Tamer Kah...