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BMCBI
2006
108views more  BMCBI 2006»
13 years 8 months ago
RibAlign: a software tool and database for eubacterial phylogeny based on concatenated ribosomal protein subunits
Background: Until today, analysis of 16S ribosomal RNA (rRNA) sequences has been the de-facto gold standard for the assessment of phylogenetic relationships among prokaryotes. How...
Hanno Teeling, Frank Oliver Glöckner
BMCBI
2005
159views more  BMCBI 2005»
13 years 8 months ago
Columba: an integrated database of proteins, structures, and annotations
Background: Structural and functional research often requires the computation of sets of protein structures based on certain properties of the proteins, such as sequence features,...
Silke Trißl, Kristian Rother, Heiko Mül...
SIGMOD
2009
ACM
220views Database» more  SIGMOD 2009»
14 years 9 months ago
Keyword search in databases: the power of RDBMS
Keyword search in relational databases (RDBs) has been extensively studied recently. A keyword search (or a keyword query) in RDBs is specified by a set of keywords to explore the...
Lu Qin, Jeffrey Xu Yu, Lijun Chang
WIA
2000
Springer
14 years 10 days ago
Fast Implementations of Automata Computations
Abstract. In 6], G. Myers describes a bit-vector algorithm to compute the edit distance between strings. The algorithm converts an input sequence to an output sequence in a paralle...
Anne Bergeron, Sylvie Hamel
SIGMOD
2005
ACM
166views Database» more  SIGMOD 2005»
14 years 9 months ago
Substructure Similarity Search in Graph Databases
Advanced database systems face a great challenge raised by the emergence of massive, complex structural data in bioinformatics, chem-informatics, and many other applications. The ...
Xifeng Yan, Philip S. Yu, Jiawei Han