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BMCBI
2005
94views more  BMCBI 2005»
13 years 8 months ago
Measuring similarities between transcription factor binding sites
Background: Collections of transcription factor binding profiles (Transfac, Jaspar) are essential to identify regulatory elements in DNA sequences. Subsets of highly similar profi...
Szymon M. Kielbasa, Didier Gonze, Hanspeter Herzel
BMCBI
2010
105views more  BMCBI 2010»
13 years 8 months ago
Subdivision of the MDR superfamily of medium-chain dehydrogenases/reductases through iterative hidden Markov model refinement
Background: The Medium-chain Dehydrogenases/Reductases (MDR) form a protein superfamily whose size and complexity defeats traditional means of subclassification; it currently has ...
Joel Hedlund, Hans Jörnvall, Bengt Persson
CSB
2003
IEEE
176views Bioinformatics» more  CSB 2003»
14 years 2 months ago
3D Structural Homology Detection via Unassigned Residual Dipolar Couplings
Recognition of a protein’s fold provides valuable information about its function. While many sequence-based homology prediction methods exist, an important challenge remains: tw...
Christopher James Langmead, Bruce Randall Donald
CIKM
2006
Springer
14 years 13 days ago
Maximizing the sustained throughput of distributed continuous queries
Monitoring systems today often involve continuous queries over streaming data, in a distributed collaborative system. The distribution of query operators over a network of process...
Ioana Stanoi, George A. Mihaila, Themis Palpanas, ...
SIGMOD
2010
ACM
214views Database» more  SIGMOD 2010»
14 years 1 months ago
ParaTimer: a progress indicator for MapReduce DAGs
Time-oriented progress estimation for parallel queries is a challenging problem that has received only limited attention. In this paper, we present ParaTimer, a new type of timere...
Kristi Morton, Magdalena Balazinska, Dan Grossman