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BIBE
2007
IEEE
152views Bioinformatics» more  BIBE 2007»
13 years 7 months ago
SBLAST: Structural Basic Local Alignment Searching Tools using Geometric Hashing
While much research has been done on finding similarities between protein sequences, there has not been the same progress on finding similarities between protein structures. Here ...
Tom Milledge, Gaolin Zheng, Tim Mullins, Giri Nara...
GCB
1997
Springer
77views Biometrics» more  GCB 1997»
13 years 11 months ago
Statistics of large scale sequence searching
Motivation: Database search programs such as FASTA, BLAST or a rigorous Smith–Waterman algorithm produce lists of database entries, which are assumed to be related to the query....
Rainer Spang, Martin Vingron
ICDM
2002
IEEE
91views Data Mining» more  ICDM 2002»
14 years 14 days ago
Mining Molecular Fragments: Finding Relevant Substructures of Molecules
We present an algorithm to find fragments in a set of molecules that help to discriminate between different classes of, for instance, activity in a drug discovery context. Instea...
Christian Borgelt, Michael R. Berthold
ICCS
2007
Springer
14 years 1 months ago
Searching and Updating Metric Space Databases Using the Parallel EGNAT
Abstract. The Evolutionary Geometric Near-neighbor Access Tree (EGNAT) is a recently proposed data structure that is suitable for indexing large collections of complex objects. It ...
Mauricio Marín, Roberto Uribe, Ricardo J. B...
BMCBI
2008
211views more  BMCBI 2008»
13 years 7 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle