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    » Using a logical model to predict the growth of yeast
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    JIB
    2006
    78views more  JIB 2006»
    Prediction of transcription factor binding to DNA using rule induction methods
    13 years 6 months ago
    Prediction of transcription factor binding to DNA using rule induction methods
    Download  journal.imbio.de
    In this study, we seek to develop a predictive model for finding the strength of binding between a particular transcription factor (TF) variant and a particular DNA target variant...
    Mikael Huss, Karin Nordström
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    BMCBI
    2011
    254views Artificial Intelligence» more  BMCBI 2011»
    Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities
    12 years 10 months ago
    Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities
    Download  www.biomedcentral.com
    Background: Gene regulatory networks play essential roles in living organisms to control growth, keep internal metabolism running and respond to external environmental changes. Un...
    Yao Fu, Laura R. Jarboe, Julie A. Dickerson
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    BIOINFORMATICS
    2006
    124views more  BIOINFORMATICS 2006»
    Probabilistic inference of transcription factor concentrations and gene-specific regulatory activities
    13 years 6 months ago
    Probabilistic inference of transcription factor concentrations and gene-specific regulatory activities
    Download  eprints.pascal-network.org
    Motivation Quantitative estimation of the regulatory relationship between transcription factors and genes is a fundamental stepping stone when trying to develop models of cellular...
    Guido Sanguinetti, Neil D. Lawrence, Magnus Rattra...
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    BMCBI
    2005
    169views more  BMCBI 2005»
    MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes
    13 years 6 months ago
    MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes
    Download  www.biomedcentral.com
    Background: Cis-regulatory modules are combinations of regulatory elements occurring in close proximity to each other that control the spatial and temporal expression of genes. Th...
    Voichita D. Marinescu, Isaac S. Kohane, Alberto Ri...
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    RECOMB
    2005
    Springer
    193views Computational Biology» more  RECOMB 2005»
    The Factor Graph Network Model for Biological Systems
    14 years 7 months ago
    The Factor Graph Network Model for Biological Systems
    Download  acgt.cs.tau.ac.il
    Abstract. We introduce an extended computational framework for studying biological systems. Our approach combines formalization of existing qualitative models that are in wide but ...
    Irit Gat-Viks, Amos Tanay, Daniela Raijman, Ron Sh...
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