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RECOMB
2003
Springer
14 years 7 months ago
An integrated probabilistic model for functional prediction of proteins
We develop an integrated probabilistic model to combine protein physical interactions, genetic interactions, highly correlated gene expression network, protein complex data, and d...
Minghua Deng, Ting Chen, Fengzhu Sun
BIBM
2009
IEEE
183views Bioinformatics» more  BIBM 2009»
13 years 11 months ago
Modeling Protein Interaction Networks with Answer Set Programming
—In this paper we propose the use of answer set programming (ASP) to model protein interaction networks. We argue that this declarative formalism rivals the popular boolean netwo...
Timur Fayruzov, Martine De Cock, Chris Cornelis, D...
SEKE
2004
Springer
14 years 1 days ago
Predicting UML Statechart Diagrams Understandability Using Fuzzy Logic-Based Techniques
In this work, we present an application of the Fuzzy Logic in the field of prediction in Software Engineering. We specifically use the Fuzzy Prototypical Knowledge Discovery for ch...
José A. Cruz-Lemus, Marcela Genero, Jos&eac...
BMCBI
2005
127views more  BMCBI 2005»
13 years 6 months ago
Dynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification
Background: Gene expression programs depend on recognition of cis elements in promoter region of target genes by transcription factors (TFs), but how TFs regulate gene expression ...
Li-Hsieh Lin, Hsiao-Ching Lee, Wen-Hsiung Li, Bor-...
WABI
2007
Springer
14 years 25 days ago
Predicting Protein Folding Kinetics Via Temporal Logic Model Checking
Christopher James Langmead⋆ and Sumit Kumar Jha Department of Computer Science, Carnegie Mellon University We present a novel approach for predicting protein folding kinetics us...
Christopher James Langmead, Sumit Kumar Jha