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JAIR
2007
107views more  JAIR 2007»
13 years 8 months ago
Compressed Pattern Databases
A pattern database (PDB) is a heuristic function implemented as a lookup table that stores the lengths of optimal solutions for subproblem instances. Standard PDBs have a distinct...
Ariel Felner, Richard E. Korf, Ram Meshulam, Rober...
TOOLS
1999
IEEE
14 years 1 months ago
Class Algebra for Ontology Reasoning
Class algebra provides a natural framework for sharing of ISA hierarchies between users that may be unaware of each other's definitions. This permits data from relational dat...
Daniel J. Buehrer, Chee-Hwa Lee
ICDE
2004
IEEE
115views Database» more  ICDE 2004»
14 years 10 months ago
Unordered Tree Mining with Applications to Phylogeny
Frequent structure mining (FSM) aims to discover and extract patterns frequently occurring in structural data, such as trees and graphs. FSM finds many applications in bioinformat...
Dennis Shasha, Jason Tsong-Li Wang, Sen Zhang
BMCBI
2008
96views more  BMCBI 2008»
13 years 9 months ago
A PATO-compliant zebrafish screening database (MODB): management of morpholino knockdown screen information
Background: The zebrafish is a powerful model vertebrate amenable to high throughput in vivo genetic analyses. Examples include reverse genetic screens using morpholino knockdown,...
Michelle N. Knowlton, Tongbin Li, Yongliang Ren, B...
BMCBI
2010
101views more  BMCBI 2010»
13 years 9 months ago
Hidden Markov model speed heuristic and iterative HMM search procedure
Background: Profile hidden Markov models (profile-HMMs) are sensitive tools for remote protein homology detection, but the main scoring algorithms, Viterbi or Forward, require con...
L. Steven Johnson, Sean R. Eddy, Elon Portugaly