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» Using a relational database for scalable XML search
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BMCBI
2006
116views more  BMCBI 2006»
15 years 4 months ago
MICA: desktop software for comprehensive searching of DNA databases
Background: Molecular biologists work with DNA databases that often include entire genomes. A common requirement is to search a DNA database to find exact matches for a nondegener...
William A. Stokes, Benjamin S. Glick
VLDB
2004
ACM
117views Database» more  VLDB 2004»
15 years 9 months ago
XQuery on SQL Hosts
Relational database systems may be turned into efficient XML and XPath processors if the system is provided with a suitable relational tree encoding. This paper extends this relat...
Torsten Grust, Sherif Sakr, Jens Teubner
155
Voted
BMCBI
2008
173views more  BMCBI 2008»
15 years 4 months ago
Extraction of semantic biomedical relations from text using conditional random fields
Background: The increasing amount of published literature in biomedicine represents an immense source of knowledge, which can only efficiently be accessed by a new generation of a...
Markus Bundschus, Mathäus Dejori, Martin Stet...
ECOOP
2006
Springer
15 years 7 months ago
codeQuest:  Scalable Source Code Queries with Datalog
Abstract. Source code querying tools allow programmers to explore relations between different parts of the code base. This paper describes such a tool, named CodeQuest. It combines...
Elnar Hajiyev, Mathieu Verbaere, Oege de Moor
SIGMOD
2004
ACM
184views Database» more  SIGMOD 2004»
16 years 4 months ago
CORDS: Automatic Discovery of Correlations and Soft Functional Dependencies
The rich dependency structure found in the columns of real-world relational databases can be exploited to great advantage, but can also cause query optimizers--which usually assum...
Ihab F. Ilyas, Volker Markl, Peter J. Haas, Paul B...