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BMCBI
2006
100views more  BMCBI 2006»
13 years 7 months ago
Using the nucleotide substitution rate matrix to detect horizontal gene transfer
Background: Horizontal gene transfer (HGT) has allowed bacteria to evolve many new capabilities. Because transferred genes perform many medically important functions, such as conf...
Micah Hamady, M. D. Betterton, Rob Knight
CEC
2009
IEEE
14 years 2 months ago
Evolutionary design of the energy function for protein structure prediction
— Automatic protein structure predictors use the notion of energy to guide the search towards good candidate structures. The energy functions used by the state-of-the-art predict...
Pawel Widera, Jonathan M. Garibaldi, Natalio Krasn...
BICOB
2009
Springer
14 years 2 months ago
A Bayesian Approach to High-Throughput Biological Model Generation
Abstract. With the availability of hundreds and soon-to-be thousands of complete genomes, the construction of genome-scale metabolic models for these organisms has attracted much a...
Xinghua Shi, Rick L. Stevens
ICML
2010
IEEE
13 years 8 months ago
Learning Fast Approximations of Sparse Coding
In Sparse Coding (SC), input vectors are reconstructed using a sparse linear combination of basis vectors. SC has become a popular method for extracting features from data. For a ...
Karol Gregor, Yann LeCun
ICML
2003
IEEE
14 years 8 months ago
Using Linear-threshold Algorithms to Combine Multi-class Sub-experts
We present a new type of multi-class learning algorithm called a linear-max algorithm. Linearmax algorithms learn with a special type of attribute called a sub-expert. A sub-exper...
Chris Mesterharm