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» Using constraint programming for lattice protein folding
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BMCBI
2006
114views more  BMCBI 2006»
13 years 7 months ago
A high level interface to SCOP and ASTRAL implemented in Python
Background: Benchmarking algorithms in structural bioinformatics often involves the construction of datasets of proteins with given sequence and structural properties. The SCOP da...
James A. Casbon, Gavin E. Crooks, Mansoor A. S. Sa...
BMCBI
2008
114views more  BMCBI 2008»
13 years 7 months ago
WSPMaker: a web tool for calculating selection pressure in proteins and domains using window-sliding
Background: In the study of adaptive evolution, it is important to detect the protein coding sites where natural selection is acting. In general, the ratio of the rate of non-syno...
Yong Seok Lee, Tae-Hyung Kim, Tae-Wook Kang, Won-H...
BMCBI
2008
78views more  BMCBI 2008»
13 years 7 months ago
A new protein linear motif benchmark for multiple sequence alignment software
Background: Linear motifs (LMs) are abundant short regulatory sites used for modulating the functions of many eukaryotic proteins. They play important roles in post-translational ...
Emmanuel Perrodou, Claudia Chica, Olivier Poch, To...
DNA
2007
Springer
107views Bioinformatics» more  DNA 2007»
14 years 1 months ago
Autonomous Programmable Nanorobotic Devices Using DNAzymes
Abstract. A major challenge in nanoscience is the design of synthetic molecular devices that run autonomously and are programmable. DNA-based synthetic molecular devices have the a...
John H. Reif, Sudheer Sahu
BCS
2008
13 years 9 months ago
A Customisable Multiprocessor for Application-Optimised Inductive Logic Programming
This paper describes a customisable processor designed to accelerate execution of inductive logic programming, targeting advanced field-programmable gate array (FPGA) technology. ...
Andreas Fidjeland, Wayne Luk, Stephen Muggleton