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» Using context to improve protein domain identification
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IJDMB
2006
86views more  IJDMB 2006»
13 years 8 months ago
Improving domain-based protein interaction prediction using biologically-significant negative dataset
: We propose a domain-based classification method to predict protein-protein interactions using probabilities of putative interacting domain pairs derived from both experimentally-...
Xiaoli Li, Soon-Heng Tan, See-Kiong Ng
BMCBI
2005
97views more  BMCBI 2005»
13 years 8 months ago
Comparative mapping of sequence-based and structure-based protein domains
Background: Protein domains have long been an ill-defined concept in biology. They are generally described as autonomous folding units with evolutionary and functional independenc...
Ya Zhang, John-Marc Chandonia, Chris H. Q. Ding, S...
BMCBI
2005
125views more  BMCBI 2005»
13 years 8 months ago
A simple approach for protein name identification: prospects and limits
Background: Significant parts of biological knowledge are available only as unstructured text in articles of biomedical journals. By automatically identifying gene and gene produc...
Katrin Fundel, Daniel Güttler, Ralf Zimmer, J...
APBC
2003
134views Bioinformatics» more  APBC 2003»
13 years 10 months ago
A Framework for Improving Protein Structure Predictions by Teamwork
Predicting the three dimensional structure of proteins is a difficult task. In the last years several approaches have been proposed for performing this task taking into account d...
Luigi Palopoli, Giorgio Terracina
BICOB
2009
Springer
14 years 3 months ago
Graph Spectral Approach for Identifying Protein Domains
Here we present a simple method based on graph spectral properties to automatically partition multi-domain proteins into individual domains. The identification of structural domain...
Hari Krishna Yalamanchili, Nita Parekh