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» Using ontologies for simulation integration
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CSB
2005
IEEE
161views Bioinformatics» more  CSB 2005»
14 years 2 months ago
Data Integration in the Mouse Genome Informatics (MGI) Database
The Mouse Genome Informatics (MGI) Database at The Jackson Laboratory provides a comprehensive public resource about the laboratory mouse. MGI curated data types include gene repr...
Donnie Qi, Judith A. Blake, James A. Kadin, Joel E...
SEMWEB
2005
Springer
14 years 2 months ago
Using Triples for Implementation: The Triple20 Ontology-Manipulation Tool
Triple20 is a ontology manipulation and visualization tool for languages built on top of the Semantic-Web RDF triple model. In this article we explain how a triple-centered design ...
Jan Wielemaker, Guus Schreiber, Bob J. Wielinga
SSDBM
1999
IEEE
135views Database» more  SSDBM 1999»
14 years 1 months ago
Query Processing in the TAMBIS Bioinformatics Source Integration System
Conducting bioinformatic analyses involves biologists in expressing requests over a range of highly heterogeneous information sources and software tools. Such activities are labor...
Norman W. Paton, Robert Stevens, Patricia G. Baker...
JIB
2007
95views more  JIB 2007»
13 years 8 months ago
Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models
The creation of quantitative, simulatable, Systems Biology Markup Language (SBML) models that accurately simulate the system under study is a time-intensive manual process that re...
Allyson L. Lister, Matthew R. Pocock, Anil Wipat
BIBM
2008
IEEE
107views Bioinformatics» more  BIBM 2008»
14 years 3 months ago
A Functional Network of Yeast Genes Using Gene Ontology Information
In the post-genomic era, the organization of genes into networks has played an important role in characterizing the functions of individual genes and the interplay between them. I...
Erliang Zeng, Giri Narasimhan, Lisa Schneper, Kala...