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BMCBI
2010
189views more  BMCBI 2010»
13 years 8 months ago
High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABERTOOTH
Background: Protein alignments are an essential tool for many bioinformatics analyses. While sequence alignments are accurate for proteins of high sequence similarity, they become...
Florian Teichert, Jonas Minning, Ugo Bastolla, Mar...
JMLR
2012
11 years 11 months ago
Randomized Optimum Models for Structured Prediction
One approach to modeling structured discrete data is to describe the probability of states via an energy function and Gibbs distribution. A recurring difficulty in these models is...
Daniel Tarlow, Ryan Prescott Adams, Richard S. Zem...
ISCIS
2005
Springer
14 years 2 months ago
Computing Communities in Large Networks Using Random Walks
Dense subgraphs of sparse graphs (communities), which appear in most real-world complex networks, play an important role in many contexts. Computing them however is generally expe...
Pascal Pons, Matthieu Latapy
ITICSE
2010
ACM
13 years 10 months ago
What did qubits ever do for me: an answer for CS2 students
We show how to teach and motivate small quantum computer programs as a supplemental topic in a CS2 data structures class. A traditional example such as Shor’s factorization [8] ...
Michael Main, Robert Frohardt, Yingdan Huang
WIA
2009
Springer
14 years 3 months ago
FAdo and GUItar
FAdo is an ongoing project which aims to provide a set of tools for symbolic manipulation of formal languages. To allow highlevel programming with complex data structures, easy pro...
André Almeida, Marco Almeida, José A...