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» Using sampling methods to improve binding site predictions
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BMCBI
2006
137views more  BMCBI 2006»
15 years 2 months ago
A classification-based framework for predicting and analyzing gene regulatory response
Background: We have recently introduced a predictive framework for studying gene transcriptional regulation in simpler organisms using a novel supervised learning algorithm called...
Anshul Kundaje, Manuel Middendorf, Mihir Shah, Chr...
105
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BMCBI
2008
144views more  BMCBI 2008»
15 years 2 months ago
Pep-3D-Search: a method for B-cell epitope prediction based on mimotope analysis
Background: The prediction of conformational B-cell epitopes is one of the most important goals in immunoinformatics. The solution to this problem, even if approximate, would help...
Yanxin Huang, Yongli Bao, Shu Yan Guo, Yan Wang, C...
95
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BMCBI
2008
108views more  BMCBI 2008»
15 years 2 months ago
Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks
Background: High throughput signature sequencing holds many promises, one of which is the ready identification of in vivo transcription factor binding sites, histone modifications...
David A. Nix, Samir J. Courdy, Kenneth M. Boucher
120
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ICDM
2009
IEEE
205views Data Mining» more  ICDM 2009»
15 years 9 months ago
Active Selection of Sensor Sites in Remote Sensing Applications
— In a data-mining approach, a model for estimation of Aerosol Optical Depth (AOD) from satellite observations is learned using collocated satellite and groundbased observations....
Debasish Das, Zoran Obradovic, Slobodan Vucetic
BMCBI
2010
139views more  BMCBI 2010»
15 years 2 months ago
CMASA: an accurate algorithm for detecting local protein structural similarity and its application to enzyme catalytic site anno
Background: The rapid development of structural genomics has resulted in many "unknown function" proteins being deposited in Protein Data Bank (PDB), thus, the functiona...
Gong-Hua Li, Jing-Fei Huang