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» VRML Molecular Dynamics Trajectories
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VRML
1999
ACM
14 years 3 months ago
VRML Molecular Dynamics Trajectories
One application of VRML is visualisation of scientific data. Using VRML results of simulations and other scientific endeavours can be published on the web with all the advantage...
Geoff Leach, James Gilbert
CGI
2000
IEEE
14 years 2 months ago
Molecular Dynamics Visualization with XML and VRML
A new Extensible Markup Language (XML) application, Molecular Dynamics Language (MoDL) has been developed. MoDL provides a simple, but powerful tool for molecular dynamics visuali...
B. Arun, V. Chandru, A. D. Ganguly, Swami Manohar
JCPHY
2011
192views more  JCPHY 2011»
13 years 1 months ago
Fast analysis of molecular dynamics trajectories with graphics processing units - Radial distribution function histogramming
The calculation of radial distribution functions (RDFs) from molecular dynamics trajectory data is a common and computationally expensive analysis task. The rate limiting step in ...
Benjamin G. Levine, John E. Stone, Axel Kohlmeyer
HPCS
2007
IEEE
14 years 5 months ago
Utilizing Averaged Configuations from Molecular Dynamics Simulation Trajectories
One of the challenges in the large-scale simulations required for many molecular systems (such as those of biological interested) is the recording, monitoring and visualization of...
Peter G. Kusalik, K. Gillis, J. Vatamanu
JCC
2006
78views more  JCC 2006»
13 years 11 months ago
Software news and updates carma: A molecular dynamics analysis program
: A computer program has been developed to aid the analysis of molecular dynamics trajectories. The program is tuned for macromolecular large-scale problems and supports features s...
Nicholas M. Glykos