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NAR
2008
115views more  NAR 2008»
13 years 9 months ago
Data growth and its impact on the SCOP database: new developments
The Structural Classification of Proteins (SCOP) database is a comprehensive ordering of all proteins of known structure, according to their evolutionary and structural relationsh...
Antonina Andreeva, Dave Howorth, John-Marc Chandon...
IANDC
2007
152views more  IANDC 2007»
13 years 9 months ago
The reactive simulatability (RSIM) framework for asynchronous systems
We define reactive simulatability for general asynchronous systems. Roughly, simulatability means that a real system implements an ideal system (specification) in a way that pre...
Michael Backes, Birgit Pfitzmann, Michael Waidner
SAC
2006
ACM
13 years 9 months ago
Efficient interactive configuration of unbounded modular systems
Interactive configuration guides a user searching through a large combinatorial space of solutions to a system of constraints. We investigate a class of very expressive underlying...
Erik Roland van der Meer, Andrzej Wasowski, Henrik...
SIGOPS
2008
119views more  SIGOPS 2008»
13 years 9 months ago
Project Kittyhawk: building a global-scale computer: Blue Gene/P as a generic computing platform
This paper describes Project Kittyhawk, an undertaking at IBM Research to explore the construction of a nextgeneration platform capable of hosting many simultaneous web-scale work...
Jonathan Appavoo, Volkmar Uhlig, Amos Waterland
BMCBI
2005
162views more  BMCBI 2005»
13 years 9 months ago
Accelerated probabilistic inference of RNA structure evolution
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
Ian Holmes