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BMCBI
2006
118views more  BMCBI 2006»
13 years 11 months ago
Djinn Lite: a tool for customised gene transcript modelling, annotation-data enrichment and exploration
Background: There is an ever increasing rate of data made available on genetic variation, transcriptomes and proteomes. Similarly, a growing variety of bioinformatic programs are ...
Erdahl T. Teber, Edward Crawford, Kent B. Bolton, ...
ENTCS
2006
183views more  ENTCS 2006»
13 years 11 months ago
Metamodel-Based Model Transformation with Aspect-Oriented Constraints
Model transformation means converting an input model available at the beginning of the transformation process to an output model. A widely used approach to model transformation us...
László Lengyel, Tihamer Levendovszky...
NAR
2008
191views more  NAR 2008»
13 years 10 months ago
The BioGRID Interaction Database: 2008 update
The Biological General Repository for Interaction Datasets (BioGRID) database (http://www. thebiogrid.org) was developed to house and distribute collections of protein and genetic...
Bobby-Joe Breitkreutz, Chris Stark, Teresa Reguly,...
BMCBI
2005
169views more  BMCBI 2005»
13 years 10 months ago
MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes
Background: Cis-regulatory modules are combinations of regulatory elements occurring in close proximity to each other that control the spatial and temporal expression of genes. Th...
Voichita D. Marinescu, Isaac S. Kohane, Alberto Ri...
BMCBI
2005
94views more  BMCBI 2005»
13 years 10 months ago
YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities
Background: A number of algorithms for steady state analysis of metabolic networks have been developed over the years. Of these, Elementary Mode Analysis (EMA) has proven especial...
Roland Schwarz, Patrick Musch, Axel von Kamp, Bern...