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» Visual software tools for bioinformatics
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WCRE
2008
IEEE
14 years 2 months ago
FAMOOSr 2008: Workshop on FAMIX and Moose in Software Reengineering
The increasing amount of data available about software systems poses new challenges for re- and reverse engineering research, as the proposed approaches need to scale. In this con...
Stéphane Ducasse, Tudor Gîrba, Orla G...
VL
2010
IEEE
218views Visual Languages» more  VL 2010»
13 years 6 months ago
Using Association Metrics to Help Users Navigate API Documentation
-- In the past decade there has been spectacular growth in the number and size of third-party libraries, frameworks, toolkits and other Application Programming Interfaces (APIs) av...
Daniel S. Eisenberg, Jeffrey Stylos, Andrew Faulri...
BMCBI
2004
142views more  BMCBI 2004»
13 years 7 months ago
GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies
Background: Microarray and other high-throughput technologies are producing large sets of interesting genes that are difficult to analyze directly. Bioinformatics tools are needed...
Bing Zhang, Denise Schmoyer, Stefan Kirov, Jay Sno...
BMCBI
2011
13 years 2 months ago
VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R
Background: Visualization of orthogonal (disjoint) or overlapping datasets is a common task in bioinformatics. Few tools exist to automate the generation of extensively-customizab...
Hanbo Chen, Paul C. Boutros
BMCBI
2006
129views more  BMCBI 2006»
13 years 7 months ago
EGenBio: A Data Management System for Evolutionary Genomics and Biodiversity
Background: Evolutionary genomics requires management and filtering of large numbers of diverse genomic sequences for accurate analysis and inference on evolutionary processes of ...
Laila A. Nahum, Matthew T. Reynolds, Zhengyuan O. ...