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BMCBI
2008
124views more  BMCBI 2008»
13 years 7 months ago
RPPAML/RIMS: A metadata format and an information management system for reverse phase protein arrays
Background: Reverse Phase Protein Arrays (RPPA) are convenient assay platforms to investigate the presence of biomarkers in tissue lysates. As with other high-throughput technolog...
Romesh Stanislaus, Mark Carey, Helena F. Deus, Kev...
JCDL
2004
ACM
100views Education» more  JCDL 2004»
14 years 29 days ago
A document corpus browser for in-depth reading
Software tools, including Web browsers, e-books, electronic document formats, search engines, and digital libraries are changing the way people read, making it easier for them to ...
Eric A. Bier, Lance Good, Kris Popat, Alan Newberg...
BMCBI
2010
120views more  BMCBI 2010»
13 years 7 months ago
Short clones or long clones? A simulation study on the use of paired reads in metagenomics
Background: Metagenomics is the study of environmental samples using sequencing. Rapid advances in sequencing technology are fueling a vast increase in the number and scope of met...
Suparna Mitra, Max Schubach, Daniel H. Huson
BMCBI
2011
12 years 11 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
VL
2005
IEEE
135views Visual Languages» more  VL 2005»
14 years 1 months ago
Easing Program Comprehension by Sharing Navigation Data
Large software projects often require a programmer to make changes to unfamiliar source code. This paper describes a set of tools, called Team Tracks, designed to ease program com...
Robert DeLine, Mary Czerwinski, George G. Robertso...