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» Visualisation and Analysis of Network Motifs
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BMCBI
2008
138views more  BMCBI 2008»
13 years 7 months ago
M-BISON: Microarray-based integration of data sources using networks
Background: The accurate detection of differentially expressed (DE) genes has become a central task in microarray analysis. Unfortunately, the noise level and experimental variabi...
Bernie J. Daigle Jr., Russ B. Altman
BMCBI
2011
12 years 11 months ago
Acorn: A grid computing system for constraint based modeling and visualization of the genome scale metabolic reaction networks v
Background: Constraint-based approaches facilitate the prediction of cellular metabolic capabilities, based, in turn on predictions of the repertoire of enzymes encoded in the gen...
Jacek Sroka, Lukasz Bieniasz-Krzywiec, Szymon Gwoz...
LREC
2010
197views Education» more  LREC 2010»
13 years 9 months ago
Automatic Annotation of Co-Occurrence Relations
We introduce a method for automatically labelling edges of word co-occurrence graphs with semantic relations. Therefore we only make use of training data already contained within ...
Dirk Goldhahn, Uwe Quasthoff
NAR
1998
161views more  NAR 1998»
13 years 7 months ago
Touring protein fold space with Dali/FSSP
The FSSP database and its new supplement, the Dali Domain Dictionary, present a continuously updated classification of all known 3D protein structures. The classification is deriv...
Liisa Holm, Chris Sander
BMCBI
2006
118views more  BMCBI 2006»
13 years 7 months ago
Low degree metabolites explain essential reactions and enhance modularity in biological networks
Background: Recently there has been a lot of interest in identifying modules at the level of genetic and metabolic networks of organisms, as well as in identifying single genes an...
Areejit Samal, Shalini Singh, Varun Giri, Sandeep ...