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BMCBI
2006
100views more  BMCBI 2006»
13 years 10 months ago
Using the nucleotide substitution rate matrix to detect horizontal gene transfer
Background: Horizontal gene transfer (HGT) has allowed bacteria to evolve many new capabilities. Because transferred genes perform many medically important functions, such as conf...
Micah Hamady, M. D. Betterton, Rob Knight
WASA
2009
Springer
189views Algorithms» more  WASA 2009»
14 years 4 months ago
Information Extraction as Link Prediction: Using Curated Citation Networks to Improve Gene Detection
Abstract. In this paper we explore the usefulness of various types of publicationrelated metadata, such as citation networks and curated databases, for the task of identifying gene...
Andrew Arnold, William W. Cohen
SC
2004
ACM
14 years 3 months ago
Unlocking the Performance of the BlueGene/L Supercomputer
The BlueGene/L supercomputer is expected to deliver new levels of application performance by providing a combination of good single-node computational performance and high scalabi...
George Almási, Siddhartha Chatterjee, Alan ...
BIBE
2003
IEEE
121views Bioinformatics» more  BIBE 2003»
14 years 3 months ago
Time Series Analysis of Gene Expression and Location Data
We develop a method for integrating time series expression profiles and factor-gene binding data to quantify dynamic aspects of gene regulation. We estimate latencies for transcr...
Chen-Hsiang Yeang, Tommi Jaakkola
EVOW
2006
Springer
14 years 1 months ago
A Hybrid GA/SVM Approach for Gene Selection and Classification of Microarray Data
We propose a Genetic Algorithm (GA) approach combined with Support Vector Machines (SVM) for the classification of high dimensional Microarray data. This approach is associated to ...
Edmundo Bonilla Huerta, Béatrice Duval, Jin...