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» Visualization of Large-Scale Weighted Clustered Graph: A Gen...
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BMCBI
2008
144views more  BMCBI 2008»
13 years 10 months ago
WGCNA: an R package for weighted correlation network analysis
Background: Correlation networks are increasingly being used in bioinformatics applications. For example, weighted gene co-expression network analysis is a systems biology method ...
Peter Langfelder, Steve Horvath
BMCBI
2008
132views more  BMCBI 2008»
13 years 10 months ago
The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes thr
Background: Data mining in large DNA sequences is a major challenge in microbial genomics and bioinformatics. Oligonucleotide usage (OU) patterns provide a wealth of information f...
Hamilton Ganesan, Anna S. Rakitianskaia, Colin F. ...
WWW
2008
ACM
14 years 10 months ago
A graph-theoretic approach to webpage segmentation
We consider the problem of segmenting a webpage into visually and semantically cohesive pieces. Our approach is based on formulating an appropriate optimization problem on weighte...
Deepayan Chakrabarti, Ravi Kumar, Kunal Punera
CP
2003
Springer
14 years 3 months ago
A SAT-Based Approach to Multiple Sequence Alignment
Multiple sequence alignment is a central problem in Bioinformatics. A known integer programming approach is to apply branch-and-cut to exponentially large graph-theoretic models. T...
Steven David Prestwich, Desmond G. Higgins, Orla O...
JIIS
2006
113views more  JIIS 2006»
13 years 9 months ago
Spatial ordering and encoding for geographic data mining and visualization
: Geographic information (e.g., locations, networks, and nearest neighbors) are unique and different from other aspatial attributes (e.g., population, sales, or income). It is a ch...
Diansheng Guo, Mark Gahegan