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» Visualizing Program Executions on Large Data Sets
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CLUSTER
2003
IEEE
14 years 23 days ago
A Cluster-Based Solution for High Performance Hmmpfam Using EARTH Execution Model
Hmmpfam is a widely used computation-intensive bioinformatics software for sequence classification. The contribution of this paper is the first largely scalable and robust clust...
Weirong Zhu, Yanwei Niu, Jizhu Lu, Chuan Shen, Gua...
IPPS
2000
IEEE
13 years 12 months ago
Combining Fusion Optimizations and Piecewise Execution of Nested Data-Parallel Programs
Abstract. Nested data-parallel programs often have large memory requirements due to their high degree of parallelism. Piecewise execution is an implementation technique used to min...
W. Pfannenstiel
LCPC
1995
Springer
13 years 11 months ago
Piecewise Execution of Nested Data-Parallel Programs
Abstract. The technique of flattening nested data parallelism combines all the independent operations in nested apply-to-all constructs and generates large amounts of potential pa...
Daniel W. Palmer, Jan Prins, Siddhartha Chatterjee...
CORR
2010
Springer
136views Education» more  CORR 2010»
13 years 7 months ago
Detecting Inconsistencies in Large Biological Networks with Answer Set Programming
Abstract. We introduce an approach to detecting inconsistencies in large biological networks by using Answer Set Programming. To this end, we build upon a recently proposed notion ...
Martin Gebser, Torsten Schaub, Sven Thiele, Philip...
DAGSTUHL
2001
13 years 8 months ago
Visualizing Memory Graphs
To understand the dynamics of a running program, it is often useful to examine its state at specific moments during its execution. We present memory graphs as a means to capture an...
Thomas Zimmermann, Andreas Zeller