Hmmpfam is a widely used computation-intensive bioinformatics software for sequence classification. The contribution of this paper is the first largely scalable and robust clust...
Abstract. Nested data-parallel programs often have large memory requirements due to their high degree of parallelism. Piecewise execution is an implementation technique used to min...
Abstract. The technique of flattening nested data parallelism combines all the independent operations in nested apply-to-all constructs and generates large amounts of potential pa...
Daniel W. Palmer, Jan Prins, Siddhartha Chatterjee...
Abstract. We introduce an approach to detecting inconsistencies in large biological networks by using Answer Set Programming. To this end, we build upon a recently proposed notion ...
Martin Gebser, Torsten Schaub, Sven Thiele, Philip...
To understand the dynamics of a running program, it is often useful to examine its state at specific moments during its execution. We present memory graphs as a means to capture an...