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DCC
2009
IEEE
16 years 5 months ago
Source Coding Scheme for Multiple Sequence Alignments
Rapid development of DNA sequencing technologies exponentially increases the amount of publicly available genomic data. Whole genome multiple sequence alignments represent a parti...
Pavol Hanus, Janis Dingel, Georg Chalkidis, Joachi...
DGCI
2006
Springer
15 years 8 months ago
Generating Distance Maps with Neighbourhood Sequences
A sequential algorithm for computing the distance map using distances based on neighbourhood sequences (of any length) in the 2D square grid; and 3D cubic, face-centered cubic, and...
Robin Strand, Benedek Nagy, Céline Fouard, ...
ECAI
2006
Springer
15 years 8 months ago
Learning by Automatic Option Discovery from Conditionally Terminating Sequences
Abstract. This paper proposes a novel approach to discover options in the form of conditionally terminating sequences, and shows how they can be integrated into reinforcement learn...
Sertan Girgin, Faruk Polat, Reda Alhajj
EMNLP
2008
15 years 5 months ago
An Analysis of Active Learning Strategies for Sequence Labeling Tasks
Active learning is well-suited to many problems in natural language processing, where unlabeled data may be abundant but annotation is slow and expensive. This paper aims to shed ...
Burr Settles, Mark Craven
CIKM
2009
Springer
15 years 11 months ago
Linear predictive coding representation of correlated mutation for protein sequence alignment
Background: Although both conservation and correlated mutation (CM) are important information reflecting the different sorts of context in multiple sequence alignment, most of ali...
Chan-seok Jeong, Dongsup Kim