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IPPS
2007
IEEE
16 years 17 days ago
Reconfigurable Architecture for Biological Sequence Comparison in Reduced Memory Space
DNA sequence alignment is a very important problem in bioinformatics. The algorithm proposed by Smith-Waterman (SW) is an exact method that obtains optimal local alignments in qua...
Azzedine Boukerche, Jan Mendonca Correa, Alba Cris...
WABI
2007
Springer
139views Bioinformatics» more  WABI 2007»
16 years 11 days ago
Computability of Models for Sequence Assembly
Graph-theoretic models have come to the forefront as some of the most powerful and practical methods for sequence assembly. Simultaneously, the computational hardness of the underl...
Paul Medvedev, Konstantinos Georgiou, Gene Myers, ...
VISSOFT
2005
IEEE
15 years 12 months ago
Interactive Exploration of UML Sequence Diagrams
Sequence diagrams are commonly used to represent object interactions in software systems. Reverse-engineered sequence diagrams, which are constructed from existing code, are becom...
Richard Sharp, Atanas Rountev
TIT
2011
102views more  TIT 2011»
15 years 1 months ago
Sequence Families With Low Correlation Derived From Multiplicative and Additive Characters
For integer r satisfying 0 ≤ r ≤ p − 2, a sequence family Ωr of polyphase sequences of prime period p, size (p − 2)pr , and maximum correlation at most 2 + (r + 1) √ p...
Kai-Uwe Schmidt
SIAMADS
2010
145views more  SIAMADS 2010»
15 years 1 months ago
Propagation of Spike Sequences in Neural Networks
Precise spatiotemporal sequences of action potentials are observed in many brain areas and are thought to be involved in the neural processing of sensory stimuli. Here, we examine ...
Arnaud Tonnelier