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CSB
2002
IEEE
221views Bioinformatics» more  CSB 2002»
14 years 2 months ago
DNA Sequence Compression Using the Burrows-Wheeler Transform
-- We investigate off-line dictionary oriented approaches to DNA sequence compression, based on the Burrows-Wheeler Transform (BWT). The preponderance of short repeating patterns i...
Donald A. Adjeroh, Yong Zhang, Amar Mukherjee, Mat...
BMCBI
2005
190views more  BMCBI 2005»
13 years 9 months ago
Species-specific analysis of protein sequence motifs using mutual information
Background: Protein sequence motifs are by definition short fragments of conserved amino acids, often associated with a specific function. Accordingly protein sequence profiles de...
Jan Hummel, Nima Keshvari, Wolfram Weckwerth, Joac...
ACRI
2008
Springer
14 years 3 months ago
Automatic Design of FPGA Processor for the Backtracking of DNA Sequences Evolution Using Cellular Automata and Genetic Algorithm
In several cases, the DNA sequences of an organism are available in different stages of its evolution and it is desirable to reconstruct the DNA sequence in a previous evolution st...
Georgios Ch. Sirakoulis
GECCO
2005
Springer
154views Optimization» more  GECCO 2005»
14 years 2 months ago
Genetic algorithms using low-discrepancy sequences
The random number generator is one of the important components of evolutionary algorithms (EAs). Therefore, when we try to solve function optimization problems using EAs, we must ...
Shuhei Kimura, Koki Matsumura
WWW
2003
ACM
14 years 2 months ago
Using Index to Manage the Ordering Structure of XML Data in the Nested Relational Sequence Database System
In this poster, we introduce the mechanism of handling the ordering structure of XML data by using the Nested Relational Sequence Database System (NRSD), which is built upon the N...
Ho Lam Lau, Wilfred Ng