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BMCBI
2006
87views more  BMCBI 2006»
13 years 7 months ago
Phylogeny based discovery of regulatory elements
Background: Algorithms that locate evolutionarily conserved sequences have become powerful tools for finding functional DNA elements, including transcription factor binding sites;...
Jason Gertz, Justin C. Fay, Barak A. Cohen
BMCBI
2006
129views more  BMCBI 2006»
13 years 7 months ago
BIPAD: A web server for modeling bipartite sequence elements
Background: Many dimeric protein complexes bind cooperatively to families of bipartite nucleic acid sequence elements, which consist of pairs of conserved half-site sequences sepa...
Chengpeng Bi, Peter K. Rogan
BMCBI
2004
150views more  BMCBI 2004»
13 years 7 months ago
Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila
Background: The discovery of cis-regulatory modules in metazoan genomes is crucial for understanding the connection between genes and organism diversity. It is important to quanti...
Saurabh Sinha, Mark D. Schroeder, Ulrich Unnerstal...
DAC
2009
ACM
14 years 2 months ago
Variational capacitance extraction of on-chip interconnects based on continuous surface model
In this paper we present a continuous surface model to describe the interconnect geometric variation, which improves the currently used model for better accuracy while not increas...
Wenjian Yu, Chao Hu, Wangyang Zhang
ICDM
2005
IEEE
168views Data Mining» more  ICDM 2005»
14 years 1 months ago
A Scalable Collaborative Filtering Framework Based on Co-Clustering
Collaborative filtering-based recommender systems, which automatically predict preferred products of a user using known preferences of other users, have become extremely popular ...
Thomas George, Srujana Merugu