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    BMCBI
    2005
    127views more  BMCBI 2005»
    Genomes are covered with ubiquitous 11 bp periodic patterns, the "class A flexible patterns"
    13 years 8 months ago
    Genomes are covered with ubiquitous 11 bp periodic patterns, the "class A flexible patterns"
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    Background: The genomes of prokaryotes and lower eukaryotes display a very strong 11 bp periodic bias in the distribution of their nucleotides. This bias is present throughout a g...
    Etienne Larsabal, Antoine Danchin
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    BMCBI
    2005
    114views more  BMCBI 2005»
    Extension of Lander-Waterman theory for sequencing filtered DNA libraries
    13 years 8 months ago
    Extension of Lander-Waterman theory for sequencing filtered DNA libraries
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    Background: The degree to which conventional DNA sequencing techniques will be successful for highly repetitive genomes is unclear. Investigators are therefore considering various...
    Michael C. Wendl, W. Bradley Barbazuk
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    BMCBI
    2005
    113views more  BMCBI 2005»
    Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks
    13 years 8 months ago
    Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks
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    Background: Biological processes are carried out by coordinated modules of interacting molecules. As clustering methods demonstrate that genes with similar expression display incr...
    Cecily J. Wolfe, Isaac S. Kohane, Atul J. Butte
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    BMCBI
    2005
    157views more  BMCBI 2005»
    Decision Forest Analysis of 61 Single Nucleotide Polymorphisms in a Case-Control Study of Esophageal Cancer; a novel method
    13 years 8 months ago
    Decision Forest Analysis of 61 Single Nucleotide Polymorphisms in a Case-Control Study of Esophageal Cancer; a novel method
    Download  www.biomedcentral.com
    Background: Systematic evaluation and study of single nucleotide polymorphisms (SNPs) made possible by high throughput genotyping technologies and bioinformatics promises to provi...
    Qian Xie, Luke D. Ratnasinghe, Huixiao Hong, Roger...
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    JCC
    2007
    121views more  JCC 2007»
    Speeding up parallel GROMACS on high-latency networks
    13 years 8 months ago
    Speeding up parallel GROMACS on high-latency networks
    Download  www.mpibpc.mpg.de
    : We investigate the parallel scaling of the GROMACS molecular dynamics code on Ethernet Beowulf clusters and what prerequisites are necessary for decent scaling even on such clust...
    Carsten Kutzner, David van der Spoel, Martin Fechn...
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