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» What Can Formal Methods Bring to Systems Biology
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ER
2001
Springer
163views Database» more  ER 2001»
14 years 2 hour ago
Towards Ontologically Based Semantics for UML Constructs
Abstract. Conceptual models are formal descriptions of application domains that are used in early stages of system development to support requirements analysis. The Unified Modeli...
Joerg Evermann, Yair Wand
CIS
2005
Springer
14 years 1 months ago
A New Conceptual Framework Within Information Privacy: Meta Privacy
When considering information security and privacy issues most of the attention has previously focussed on data protection and the privacy of personally identifiable information (PI...
Geoff Skinner, Song Han, Elizabeth Chang
BMCBI
2004
154views more  BMCBI 2004»
13 years 7 months ago
Computation of elementary modes: a unifying framework and the new binary approach
Background: Metabolic pathway analysis has been recognized as a central approach to the structural analysis of metabolic networks. The concept of elementary (flux) modes provides ...
Julien Gagneur, Steffen Klamt
ALMOB
2007
155views more  ALMOB 2007»
13 years 7 months ago
Finding coevolving amino acid residues using row and column weighting of mutual information and multi-dimensional amino acid rep
Background: Some amino acid residues functionally interact with each other. This interaction will result in an evolutionary co-variation between these residues – coevolution. Ou...
Rodrigo Gouveia-Oliveira, Anders Gorm Pedersen
FMSB
2008
129views Formal Methods» more  FMSB 2008»
13 years 9 months ago
Rule-Based Modelling, Symmetries, Refinements
Rule-based modelling is particularly effective for handling the highly combinatorial aspects of cellular signalling. The dynamics is described in terms of interactions between part...
Vincent Danos, Jérôme Feret, Walter F...