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BMCBI
2011
12 years 11 months ago
Learning sparse models for a dynamic Bayesian network classifier of protein secondary structure
Background: Protein secondary structure prediction provides insight into protein function and is a valuable preliminary step for predicting the 3D structure of a protein. Dynamic ...
Zafer Aydin, Ajit Singh, Jeff Bilmes, William Staf...
BMCBI
2011
12 years 11 months ago
Evaluating methods for ranking differentially expressed genes applied to MicroArray Quality Control data
Background: Statistical methods for ranking differentially expressed genes (DEGs) from gene expression data should be evaluated with regard to high sensitivity, specificity, and r...
Koji Kadota, Kentaro Shimizu
BMCBI
2011
12 years 11 months ago
Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities
Background: Gene regulatory networks play essential roles in living organisms to control growth, keep internal metabolism running and respond to external environmental changes. Un...
Yao Fu, Laura R. Jarboe, Julie A. Dickerson
FUIN
2011
358views Cryptology» more  FUIN 2011»
12 years 11 months ago
Unsupervised and Supervised Learning Approaches Together for Microarray Analysis
In this article, a novel concept is introduced by using both unsupervised and supervised learning. For unsupervised learning, the problem of fuzzy clustering in microarray data as ...
Indrajit Saha, Ujjwal Maulik, Sanghamitra Bandyopa...
ICALP
2011
Springer
12 years 11 months ago
On Tree-Constrained Matchings and Generalizations
We consider the following Tree-Constrained Bipartite Matching problem: Given two rooted trees T1 = (V1, E1), T2 = (V2, E2) and a weight function w : V1 × V2 → R+, find a maximu...
Stefan Canzar, Khaled M. Elbassioni, Gunnar W. Kla...