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» What is a Biological Function
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FCCM
2009
IEEE
169views VLSI» more  FCCM 2009»
15 years 11 months ago
RC-BLASTn: Implementation and Evaluation of the BLASTn Scan Function
BLASTn is a tool universally used by biologists to identify similarities between nucleotide based biological genome sequences. This report describes an FPGA based hardware impleme...
Siddhartha Datta, Parag Beeraka, Ron Sass
GECCO
2008
Springer
104views Optimization» more  GECCO 2008»
15 years 5 months ago
Protein-protein functional association prediction using genetic programming
Determining if a group of proteins are functionally associated among themselves is an open problem in molecular biology. Within our long term goal of applying Genetic Programming ...
Beatriz García, Ricardo Aler, Agapito Ledez...
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BMCBI
2006
98views more  BMCBI 2006»
15 years 4 months ago
The Secrets of a Functional Synapse - From a Computational and Experimental Viewpoint
Background: Neuronal communication is tightly regulated in time and in space. The neuronal transmission takes place in the nerve terminal, at a specialized structure called the sy...
Michal Linial
JCB
2006
97views more  JCB 2006»
15 years 4 months ago
Wavelet Analysis of DNA Walks
A wavelet transform of the DNA "walk" constructed from a genomic sequence offers a direct visualization of short and long-range patterns in nucleotide sequences. We stud...
Adrian D. Haimovich, Bruce Byrne, Ramakrishna Rama...
ACMSE
2006
ACM
15 years 10 months ago
Reconstructing networks using co-temporal functions
Reconstructing networks from time series data is a difficult inverse problem. We apply two methods to this problem using co-temporal functions. Co-temporal functions capture mathe...
Edward E. Allen, Anthony Pecorella, Jacquelyn S. F...