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BMCBI
2010
131views more  BMCBI 2010»
13 years 5 months ago
A two-step site and mRNA-level model for predicting microRNA targets
Background: Despite experiments showing that the number of microRNA (miRNA) target sites is critical for miRNA targeting, most existing methods focus on identifying individual miR...
Takaya Saito, Pål Sætrom
ECCC
2010
143views more  ECCC 2010»
13 years 5 months ago
Space-Efficient Algorithms for Reachability in Surface-Embedded Graphs
We consider the reachability problem for a certain class of directed acyclic graphs embedded on surfaces. Let G(m, g) be the class of directed acyclic graphs with m = m(n) source ...
Derrick Stolee, N. V. Vinodchandran
CORR
2010
Springer
149views Education» more  CORR 2010»
13 years 4 months ago
Constructions of Optical Queues With a Limited Number of Recirculations--Part II: Optimal Constructions
One of the main problems in all-optical packet-switched networks is the lack of optical buffers, and one feasible technology for the constructions of optical buffers is to use opt...
Xuan-Chao Huang, Jay Cheng
BMCBI
2011
13 years 2 months ago
PileLine: a toolbox to handle genome position information in next-generation sequencing studies
Background: Genomic position (GP) files currently used in next-generation sequencing (NGS) studies are always difficult to manipulate due to their huge size and the lack of approp...
Daniel Glez-Peña, Gonzalo Gómez-L&oa...
BMCBI
2011
13 years 2 months ago
ASPDock: protein-protein docking algorithm using atomic solvation parameters model
Background: Atomic Solvation Parameters (ASP) model has been proven to be a very successful method of calculating the binding free energy of protein complexes. This suggests that ...
Lin Li, Dachuan Guo, Yangyu Huang, Shiyong Liu, Yi...
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