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BMCBI
2010
139views more  BMCBI 2010»
13 years 7 months ago
CMASA: an accurate algorithm for detecting local protein structural similarity and its application to enzyme catalytic site anno
Background: The rapid development of structural genomics has resulted in many "unknown function" proteins being deposited in Protein Data Bank (PDB), thus, the functiona...
Gong-Hua Li, Jing-Fei Huang
BMCBI
2006
116views more  BMCBI 2006»
13 years 7 months ago
Gene annotation and network inference by phylogenetic profiling
Background: Phylogenetic analysis is emerging as one of the most informative computational methods for the annotation of genes and identification of evolutionary modules of functi...
Jie Wu, Zhenjun Hu, Charles DeLisi
ICASSP
2008
IEEE
14 years 1 months ago
Probabilistic framework for gene expression clustering validation based on gene ontology and graph theory
Based on the correlation between expression and ontologydriven gene similarity, we incorporate functional annotations into gene expression clustering validation. A probabilistic f...
Yinyin Yuan, Chang-Tsun Li
LREC
2010
225views Education» more  LREC 2010»
13 years 8 months ago
C-3: Coherence and Coreference Corpus
The phenomenon of coreference, covering entities, their mentions and their properties, is intricately linked to the phenomenon of coherence, covering the structure of rhetorical r...
Cristina Nicolae, Gabriel Nicolae, Kirk Roberts
LREC
2008
128views Education» more  LREC 2008»
13 years 8 months ago
Relation between Agreement Measures on Human Labeling and Machine Learning Performance: Results from an Art History Domain
We discuss factors that affect human agreement on a semantic labeling task in the art history domain, based on the results of four experiments where we varied the number of labels...
Rebecca J. Passonneau, Thomas Lippincott, Tae Yano...