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JGAA
2006
69views more  JGAA 2006»
13 years 10 months ago
Efficient drawing of RNA secondary structure
In this paper, we propose a new layout algorithm that draws the secondary structure of a Ribonucleic Acid (RNA) automatically according to some of the biologists' aesthetic c...
David Auber, Maylis Delest, Jean-Philippe Domenger...
BMCBI
2006
242views more  BMCBI 2006»
13 years 10 months ago
Predicting residue-wise contact orders in proteins by support vector regression
Background: The residue-wise contact order (RWCO) describes the sequence separations between the residues of interest and its contacting residues in a protein sequence. It is a ne...
Jiangning Song, Kevin Burrage
BMCBI
2006
112views more  BMCBI 2006»
13 years 10 months ago
Protein disorder prediction by condensed PSSM considering propensity for order or disorder
Background: More and more disordered regions have been discovered in protein sequences, and many of them are found to be functionally significant. Previous studies reveal that dis...
Chung-Tsai Su, Chien-Yu Chen, Yu-Yen Ou
BMCBI
2006
117views more  BMCBI 2006»
13 years 10 months ago
Incorporating background frequency improves entropy-based residue conservation measures
Background: Several entropy-based methods have been developed for scoring sequence conservation in protein multiple sequence alignments. High scoring amino acid positions may corr...
Kai Wang, Ram Samudrala
ACID
2006
220views Algorithms» more  ACID 2006»
13 years 11 months ago
Vertex and Edge Covers with Clustering Properties: Complexity and Algorithms
We consider the concepts of a t-total vertex cover and a t-total edge cover (t 1), which generalize the notions of a vertex cover and an edge cover, respectively. A t-total verte...
Henning Fernau, David Manlove