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ALGORITHMICA
2008
63views more  ALGORITHMICA 2008»
13 years 9 months ago
The Swap Edges of a Multiple-Sources Routing Tree
Let T be a spanning tree of a graph G and S V (G) be a set of sources. The routing cost of T is the total distance from all sources to all vertices. For an edge e of T, the swap ...
Bang Ye Wu, Chih-Yuan Hsiao, Kun-Mao Chao
ALGORITHMICA
2008
115views more  ALGORITHMICA 2008»
13 years 9 months ago
Algorithm Engineering for Color-Coding with Applications to Signaling Pathway Detection
Color-coding is a technique to design fixed-parameter algorithms for several NP-complete subgraph isomorphism problems. Somewhat surprisingly, not much work has so far been spent ...
Falk Hüffner, Sebastian Wernicke, Thomas Zich...
ALGORITHMICA
2008
82views more  ALGORITHMICA 2008»
13 years 9 months ago
Random Bichromatic Matchings
Given a graph with edges colored Red and Blue, we wish to sample and approximately count the number of perfect matchings with exactly k Red edges. We study a Markov chain on the sp...
Nayantara Bhatnagar, Dana Randall, Vijay V. Vazira...
ALGORITHMICA
2008
52views more  ALGORITHMICA 2008»
13 years 9 months ago
From Constrained to Unconstrained Maximum Agreement Subtree in Linear Time
We propose and study the Maximum Constrained Agreement Subtree (MCAST) problem, which is a variant of the classical Maximum Agreement Subtree (MAST) problem. Our problem allows us...
V. Berry, Z. S. Peng, H. F. Ting
ALGORITHMICA
2008
83views more  ALGORITHMICA 2008»
13 years 9 months ago
Inferring (Biological) Signal Transduction Networks via Transitive Reductions of Directed Graphs
In this paper we consider the p-ary transitive reduction (TRp) problem where p > 0 is an integer; for p = 2 this problem arises in inferring a sparsest possible (biological) sig...
Réka Albert, Bhaskar DasGupta, Riccardo Don...