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BIBE
2007
IEEE
174views Bioinformatics» more  BIBE 2007»
14 years 1 months ago
Shortest Path Approaches for the Longest Common Subsequence of a Set of Strings
—We investigate the k-LCS problem that is finding a longest common subsequence (LCS) for k given input strings. The problem is known to have practical solutions for k = 2, but f...
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upt...
BIBE
2007
IEEE
132views Bioinformatics» more  BIBE 2007»
14 years 1 months ago
Morphometric Analysis of Hippocampal Shape in Mild Cognitive Impairment: An Imaging Genetics Study
—A computational framework is presented for surface based morphometry to localize shape changes between groups of 3D objects. It employs the spherical harmonic (SPHARM) method fo...
Li Shen, Andrew J. Saykin, Moo K. Chung, Heng Huan...
BIBE
2007
IEEE
138views Bioinformatics» more  BIBE 2007»
14 years 1 months ago
A Flexible Stem-Based Local Search Algorithm for Predicting RNA Secondary Structures Including Pseudoknots
-We demonstrate a new algorithm named FlexStem to predict RNA secondary structures with pseudoknots. Our approach is based on the free energy minimization criterion, and utilizes a...
Xiang Chen, Simin He, Dongbo Bu, Runsheng Chen, We...
BIBE
2007
IEEE
145views Bioinformatics» more  BIBE 2007»
14 years 1 months ago
Homomorphisms of Multisource Trees into Networks with Applications to Metabolic Pathways
Network mapping is a convenient tool for comparing and exploring biological networks; it can be used for predicting unknown pathways, fast and meaningful searching of databases, a...
Qiong Cheng, Robert W. Harrison, Alexander Zelikov...
BIBE
2007
IEEE
115views Bioinformatics» more  BIBE 2007»
14 years 1 months ago
Semiparametric RMA Background-Correction for Oligonucleotide Arrays
—Microarray technology has provided an opportunity to simultaneously monitor the expression levels of a large number of genes in response to intentional perturbations. A necessar...
Ionut Bebu, Françoise Seillier-Moiseiwitsch...