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BIOCOMP
2006
13 years 11 months ago
Acceleration of Covariance Models for Non-coding RNA Search
Stochastic context-free grammar (SCFG) based models for non-coding RNA (ncRNA) gene searches are much more powerful than regular grammar based models due to the ability to model in...
Scott F. Smith 0002
BIOCOMP
2006
13 years 11 months ago
Filtering Tandem Repeats in DNA Sequences
A tandem repeat is a sequence of two or more contiguous, approximate copies of a pattern. Tandem repeats occur in the genomes of both eukaryotic and prokaryotic organisms. They ar...
Dina Sokol, Justin Tojeira
BIOCOMP
2006
13 years 11 months ago
Basic Reproductive Rate of a Spatial Epidemic Seir Model using Computer Algebra Software
The use of computer algebra software has many applications in diverse fields like epidemiology. This work pretends to show how computer algebra software applications for symbolic ...
Sebastian Guzmán, Juan Fernando Ospina
BIOCOMP
2006
13 years 11 months ago
Finishing Repetitive Regions Automatically with Dupfinisher
Currently, the genome sequencing community is producing shotgun sequence data at a very high rate, but genome finishing is not keeping pace, even with the help from several automa...
Cliff Han, Patrick Chain
BIOCOMP
2006
13 years 11 months ago
Marker Gene Selection Evaluation in Brain Tumor Patients Using Parallel Coordinates
Based on microarray gene expression datasets, many statistical methods have been proposed to locate the significant differentially expressed genes (marker genes) among different sa...
Atiq Islam, Khan M. Iftekharuddin, David J. Russom...