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BIOCOMP
2006
13 years 11 months ago
Parameterized Computation of LCS for Two Sequences
- The problem of finding the longest common subsequence is a well-known optimization problem because of its applications, especially in bioinformatics. In this paper, by applying t...
Yuan Lin, Jeff Jenness, Xiuzhen Huang
BIOCOMP
2006
13 years 11 months ago
Polyome: A Learning System for Extracting Bioinformatic Data
: The exponential growth in the quantity of publicly available genetic data and the proliferation of bioinformatic databases mean that scientists need computerized tools more than ...
Bob Myers, Trevor I. Dix, Ross L. Coppel, David G....
BIOCOMP
2006
13 years 11 months ago
Fast Dictionary Lookup in Genomic Information Retrieval
Indexing and retrieval techniques for homology searching of genomic databases are increasingly important as the search tools are facing great challenges of rapid growth in sequence...
Simon M. C. Yuen, Fu-Lai Chung, Robert Wing Pong L...
BIOCOMP
2006
13 years 11 months ago
Evidence for Functional Protein Fragment Homology in Viral Genome Types
In this paper evidence is presented that supports the hypothesis that amino acid usage bias is a fundamental property of viral genome types. Clues to the biological basis for the o...
John Rose, Rishi Mukhopadhyay
BIOCOMP
2006
13 years 11 months ago
The Use of Context-Sensitive Grammar For Modeling RNA Pseudoknots
- In this study, a context-sensitive grammar is suggested to model various forms of RNA secondary structures, especially pseudoknots. Comparing with a conventional context-free gra...
Keum-Young Sung