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ICSM
2007
IEEE
14 years 4 months ago
A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search
Bioinformaticists use the Basic Local Alignment Search Tool (BLAST) to characterize an unknown sequence by comparing it against a database of known sequences, thus detecting evolu...
Jeremy S. Archuleta, Eli Tilevich, Wu-chun Feng
KDD
2007
ACM
184views Data Mining» more  KDD 2007»
14 years 10 months ago
Dynamic hybrid clustering of bioinformatics by incorporating text mining and citation analysis
To unravel the concept structure and dynamics of the bioinformatics field, we analyze a set of 7401 publications from the Web of Science and MEDLINE databases, publication years 1...
Bart De Moor, Frizo A. L. Janssens, Wolfgang Gl&au...
IJBRA
2007
120views more  IJBRA 2007»
13 years 9 months ago
The myGrid ontology: bioinformatics service discovery
: In this paper we explore issues in the development of the my Grid ontology, which is an OWL ontology designed to support service discovery through service annotation. There are c...
Katy Wolstencroft, Pinar Alper, Duncan Hull, Chris...
BIBE
2007
IEEE
121views Bioinformatics» more  BIBE 2007»
14 years 1 months ago
Tracing Lineage in Multi-version Scientific Databases
The critical need for better tracing of lineage in scientific databases is well known [6]. It is clear that performance is not an issue for most domain scientists
Mingwu Zhang, Daisuke Kihara, Sunil Prabhakar
BIOINFORMATICS
2010
250views more  BIOINFORMATICS 2010»
13 years 8 months ago
DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
Summary: High-throughput RNA sequencing (RNA-seq) is rapidly emerging as a major quantitative transcriptome profiling platform. Here we present DEGseq, an R package to identify di...
Likun Wang, Zhixing Feng, Xi Wang, Xiaowo Wang, Xu...