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BIOINFORMATICS
2006
13 years 9 months ago
2006
SUMMARY: In this paper, we combined EST information from the UniGene database and orthologous relationships from the Ensembl database to construct a ZooDDD database. The primary f...
BIOINFORMATICS
2006
13 years 9 months ago
2006
A small class of RNA molecules, in particular the tiny genomes of viroids, are circular. Yet most structure prediction algorithms handle only linear RNAs. The most straightforward ...
BIOINFORMATICS
2006
13 years 9 months ago
2006
Affymetrix high-density oligonucleotide microarrays measure expression of DNA transcripts using probesets, i.e. multiple probes per transcript. Usually, these multiple measurement...
BIOINFORMATICS
2006
13 years 9 months ago
2006
Motivation: The need for normalization in microarray experiments has been well documented in the literature. Currently, most analysis methods treat normalization and analysis as a...
BIOINFORMATICS
2005
13 years 9 months ago
2005
Abstract: The presence of different neighbor dependent substitution processes generates specific patterns of dinucleotide frequencies in all organisms. Based on a general framework...