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BIOINFORMATICS
2000
74views more  BIOINFORMATICS 2000»
13 years 9 months ago
Net Nearest Neighbor Analysis (NNNA) summarizes non-compensated dinucleotides within gene sequences
Motivation: Net Nearest Neighbor Analysis (NNNA) measures a previously unexamined aspect of dinucleotide frequency--the non-compensated, non-repetitive dinucleotides in a sequence...
Dorothy M. Lang
BIOINFORMATICS
2002
146views more  BIOINFORMATICS 2002»
13 years 9 months ago
A duplication growth model of gene expression networks
Motivation: There has been considerable interest in developing computational techniques for inferring genetic regulatory networks from whole-genome expression profiles. When expre...
Ashish Bhan, David J. Galas, T. Gregory Dewey
BIOINFORMATICS
2002
100views more  BIOINFORMATICS 2002»
13 years 9 months ago
Optimal algorithms for local vertex quartet cleaning
Reconstructing evolutionary trees is an important problem in biology. A response to the computational intractability of most of the traditional criteria for inferring evolutionary...
Gianluca Della Vedova, Todd Wareham
BIOINFORMATICS
2005
140views more  BIOINFORMATICS 2005»
13 years 9 months ago
Profile-based direct kernels for remote homology detection and fold recognition
Motivation: Remote homology detection between protein sequences is a central problem in computational biology. Supervised learning algorithms based on support vector machines are ...
Huzefa Rangwala, George Karypis
BIOINFORMATICS
2004
86views more  BIOINFORMATICS 2004»
13 years 9 months ago
Transposable element annotation of the rice genome
Motivation: The high content of repetitive sequences in the genomes of many higher eukaryotes renders the task of annotating them computationally intensive. Presently, the only wi...
Nikoleta Juretic, Thomas E. Bureau, Richard M. Bru...