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BIBE
2007
IEEE
126views Bioinformatics» more  BIBE 2007»
13 years 11 months ago
FPGA Acceleration of Phylogeny Reconstruction for Whole Genome Data
In this paper we describe our design and characterization of a co-processor architecture to accelerate median-based phylogenetic reconstruction for generearrangement data. Our curr...
Jason D. Bakos, Panormitis E. Elenis, Jijun Tang
BIRD
2007
Springer
120views Bioinformatics» more  BIRD 2007»
14 years 3 months ago
Joining Softassign and Dynamic Programming for the Contact Map Overlap Problem
Comparison of 3-dimensional protein folds is a core problem in molecular biology. The Contact Map Overlap (CMO) scheme provides one of the most common measures for protein structur...
Brijnesh J. Jain, Michael Lappe
BIRD
2007
Springer
154views Bioinformatics» more  BIRD 2007»
14 years 3 months ago
Mining Spatial Gene Expression Data for Association Rules
Abstract. We analyse data from the Edinburgh Mouse Atlas GeneExpression Database (EMAGE) which is a high quality data source for spatio-temporal gene expression patterns. Using a n...
Jano I. van Hemert, Richard A. Baldock
BIBE
2007
IEEE
168views Bioinformatics» more  BIBE 2007»
14 years 4 months ago
Tissue Identification in Ultrasound Images using Rayleigh Local Parameter Estimation
A method to identify different tissues in ultrasound images is presented. Assuming a Rayleigh modelfor speckle, the different tissues present in the image will be related to the R...
Santiago Aja-Fernández, Marcos Martí...
ISBRA
2007
Springer
14 years 3 months ago
Clustering Algorithms Optimizer: A Framework for Large Datasets
Clustering algorithms are employed in many bioinformatics tasks, including categorization of protein sequences and analysis of gene-expression data. Although these algorithms are r...
Roy Varshavsky, David Horn, Michal Linial