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WABI
2007
Springer
123views Bioinformatics» more  WABI 2007»
14 years 2 months ago
Inverse Sequence Alignment from Partial Examples
When aligning biological sequences, the choice of parameter values for the alignment scoring function is critical. Small changes in gap penalties, for example, can yield radically ...
Eagu Kim, John D. Kececioglu
WABI
2007
Springer
157views Bioinformatics» more  WABI 2007»
14 years 2 months ago
Composing Globally Consistent Pathway Parameter Estimates Through Belief Propagation
Abstract. Parameter estimation of large bio-pathway models is an important and difficult problem. To reduce the prohibitive computational cost, one approach is to decompose a large...
Geoffrey Koh, Lisa Tucker-Kellogg, David Hsu, P. S...
ICML
2007
IEEE
14 years 9 months ago
Local dependent components
We introduce a mixture of probabilistic canonical correlation analyzers model for analyzing local correlations, or more generally mutual statistical dependencies, in cooccurring d...
Arto Klami, Samuel Kaski
ICSEA
2007
IEEE
14 years 3 months ago
A Tool for Automated Performance Testing of Java3D Applications in Agile Environments
Following the agile philosophy that all core features of a system need an automated test harness, performance requirements also need such a check when they are essential for the s...
Xueling Shu, Frank Maurer
IPPS
2007
IEEE
14 years 3 months ago
High Performance Database Searching with HMMer on FPGAs
1 Profile Hidden Markov Models (profile HMMs) are used as a popular bioinformatics tool for sensitive database searching, e.g. a set of not annotated protein sequences is compared...
Timothy F. Oliver, Leow Yuan Yeow, Bertil Schmidt