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WABI
2007
Springer
14 years 2 months ago
A Graph Clustering Approach to Weak Motif Recognition
The aim of the motif recognition problem is to detect a set of mutually similar subsequences within a collection of biological sequences. The weak motif recognition problem on DNA ...
Christina Boucher, Daniel G. Brown, Paul Church
WABI
2007
Springer
121views Bioinformatics» more  WABI 2007»
14 years 2 months ago
Seeded Tree Alignment and Planar Tanglegram Layout
The optimal transformation of one tree into another by means of elementary edit operations is an important algorithmic problem that has several interesting applications to computat...
Antoni Lozano, Ron Y. Pinter, Oleg Rokhlenko, Gabr...
WABI
2007
Springer
14 years 2 months ago
Bringing Folding Pathways into Strand Pairing Prediction
Abstract. The topology of β-sheets is defined by the pattern of hydrogenbonded strand pairing. Therefore, predicting hydrogen bonded strand partners is a fundamental step towards...
Jieun K. Jeong, Piotr Berman, Teresa M. Przytycka
WIA
2007
Springer
14 years 2 months ago
Analyzing Ambiguity of Context-Free Grammars
It has been known since 1962 that the ambiguity problem for context-free grammars is undecidable. Ambiguity in context-free grammars is a recurring problem in language design and p...
Claus Brabrand, Robert Giegerich, Anders Mø...
ARC
2007
Springer
123views Hardware» more  ARC 2007»
14 years 22 days ago
Multiple Sequence Alignment Using Reconfigurable Computing
The alignment of multiple protein (or DNA) sequences is a current problem in Bioinformatics. ClustalW is the most popular heuristic algorithm for multiple sequence alignment. Pairw...
Carlos R. Erig Lima, Heitor S. Lopes, Maiko R. Mor...