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BIBM
2008
IEEE
113views Bioinformatics» more  BIBM 2008»
15 years 11 months ago
Towards Site-Based Protein Functional Annotations
Abstract—The exact relationship between protein active centers and protein functions is unclear even after decades of intensive study. To improve the functional prediction abilit...
Seak Fei Lei, Jun Huan
BIBE
2008
IEEE
15 years 11 months ago
VIP: Visualization of integrated proteomics data
—The post-genomic era is characterized by the rapid data accumulation leading to unwieldy and large volumes of biological data. The proteomics results (large sets of identified p...
Eugenia G. Giannopoulou, Giorgos Lepouras, Elias S...
BIBM
2008
IEEE
110views Bioinformatics» more  BIBM 2008»
15 years 11 months ago
Genome Alignments Using MPI-LAGAN
We develop a parallel algorithm for a widely used whole genome alignment method called LAGAN. We use the MPI-based protocol to develop parallel solutions for two phases of the alg...
Ruinan Zhang, Huzefa Rangwala, George Karypis
DNA
2008
Springer
149views Bioinformatics» more  DNA 2008»
15 years 6 months ago
Connecting the Dots: Molecular Machinery for Distributed Robotics
Abstract. Nature is considered one promising area to search for inspiration in designing robotic systems. Some work in swarm robotics has tried to build systems that resemble distr...
Yuriy Brun, Dustin Reishus
BIBE
2008
IEEE
272views Bioinformatics» more  BIBE 2008»
15 years 11 months ago
Design and implementation of the Smith-Waterman algorithm on the CUDA-compatible GPU
— This paper describes a design and implementation of the Smith-Waterman algorithm accelerated on the graphics processing unit (GPU). Our method is implemented using compute uniï...
Yuma Munekawa, Fumihiko Ino, Kenichi Hagihara