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TREC
2007
13 years 11 months ago
Information Retrieval and Information Extraction in TREC Genomics 2007
In TREC Genomics a question/answering task has been proposed. A set of questions with a specific entity of interest is proposed and a set of passages from a collection of full te...
Antonio Jimeno-Yepes, Piotr Pezik
BIB
2008
86views more  BIB 2008»
13 years 10 months ago
Recent developments in the MAFFT multiple sequence alignment program
The accuracy and scalability of multiple sequence alignment (MSA) of DNAs and proteins have long been and are still important issues in bioinformatics. To rapidly construct a reas...
Kazutaka Katoh, Hiroyuki Toh
BIB
2008
77views more  BIB 2008»
13 years 10 months ago
Experience using web services for biological sequence analysis
Programmatic access to data and tools through the web using so-called web services has an important role to play in bioinformatics. In this article, we discuss the most popular ap...
Heinz Stockinger, Teresa K. Attwood, Shahid Nadeem...
BMCBI
2008
100views more  BMCBI 2008»
13 years 10 months ago
Extracting unrecognized gene relationships from the biomedical literature via matrix factorizations
Background: The construction of literature-based networks of gene-gene interactions is one of the most important applications of text mining in bioinformatics. Extracting potentia...
Hyunsoo Kim, Haesun Park, Barry L. Drake
BMCBI
2008
74views more  BMCBI 2008»
13 years 10 months ago
Prediction of mucin-type O-glycosylation sites in mammalian proteins using the composition of k-spaced amino acid pairs
Background: As one of the most common protein post-translational modifications, glycosylation is involved in a variety of important biological processes. Computational identificat...
Yong-Zi Chen, Yu-Rong Tang, Zhi-Ya Sheng, Ziding Z...