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BIBE
2010
IEEE
148views Bioinformatics» more  BIBE 2010»
13 years 4 months ago
Prediction of Gene Ontology Annotations Based on Gene Functional Clustering
We propose an algorithm that predicts potentially missing Gene Ontology annotations, in order to speed up the time-consuming annotation curation process. The proposed method extend...
Marco Tagliasacchi, Roberto Sarati, Marco Masserol...
BIOINFORMATICS
2010
108views more  BIOINFORMATICS 2010»
13 years 8 months ago
Mass spectrometry data processing using zero-crossing lines in multi-scale of Gaussian derivative wavelet
Motivation: Peaks are the key information in Mass Spectrometry (MS) which has been increasingly used to discover diseases related proteomic patterns. Peak detection is an essentia...
Nha Nguyen, Heng Huang, Soontorn Oraintara, An P. ...
BMCBI
2010
143views more  BMCBI 2010»
13 years 10 months ago
ETE: a python Environment for Tree Exploration
Background: Many bioinformatics analyses, ranging from gene clustering to phylogenetics, produce hierarchical trees as their main result. These are used to represent the relations...
Jaime Huerta-Cepas, Joaquín Dopazo, Toni Ga...
IMCSIT
2010
13 years 7 months ago
TREF - TRanslation Enhancement Framework for Japanese-English
Abstract--We present a method for improving existing statistical machine translation methods using an knowledge-base compiled from a bilingual corpus as well as sequence alignment ...
Bartholomäus Wloka, Werner Winiwarter
RECOMB
2010
Springer
14 years 4 months ago
Alignment-Free Phylogenetic Reconstruction
We introduce the first polynomial-time phylogenetic reconstruction algorithm under a model of sequence evolution allowing insertions and deletions—or indels. Given appropriate ...
Constantinos Daskalakis, Sébastien Roch