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WAIM
2010
Springer
13 years 8 months ago
HyperGraphDB: A Generalized Graph Database
We present HyperGraphDB, a novel graph database based on generalized hypergraphs where hyperedges can contain other hyperedges. This generalization automatically reifies every ent...
Borislav Iordanov
ERSA
2010
182views Hardware» more  ERSA 2010»
13 years 7 months ago
Integrating Application Specification and Performance Prediction for Strategic Design-Space Exploration
Abstract--Modeling environments and performance prediction boost application productivity, but often lack integration into an efficient and comprehensive approach to strategic desi...
Brian Holland, Alan D. George, Herman Lam
GCB
2010
Springer
198views Biometrics» more  GCB 2010»
13 years 7 months ago
RNALfoldz: Efficient Prediction of Thermodynamically Stable, Local Secondary Structures
Abstract: The search for local RNA secondary structures and the annotation of unusually stable folding regions in genomic sequences are two well motivated bioinformatic problems. I...
Andreas R. Gruber, Stephan H. F. Bernhart, You Zho...
IWPEC
2010
Springer
13 years 7 months ago
Partial Kernelization for Rank Aggregation: Theory and Experiments
RANK AGGREGATION is important in many areas ranging from web search over databases to bioinformatics. The underlying decision problem KEMENY SCORE is NP-complete even in case of fo...
Nadja Betzler, Robert Bredereck, Rolf Niedermeier
WEA
2010
Springer
205views Algorithms» more  WEA 2010»
13 years 7 months ago
Practical Compressed Suffix Trees
Abstract. The suffix tree is an extremely important data structure for stringology, with a wealth of applications in bioinformatics. Classical implementations require much space, w...
Rodrigo Cánovas, Gonzalo Navarro